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Publications

Journal Articles

In five years of funding (FY2007-2011), this project has to date generated 22 peer-reviewed journal publications. According to ISI, these articles have been cited 106 times (see graph below), with an equivalent "H-index" of 6. The highest-cited paper is Tartakovsky et al., Water Resources Research, 2008, which has been cited 19 times. For the eleven papers published in 2009 or earlier (for which there are at least two years of citation data), the equivalent Impact Factor is 6.27. This compares very favorably with the Impact Factors of Water Resources Research (2.74, #2 journal in Water Resources) and Advances in Water Resources (2.48, #4 journal in Water Resources), indicating that the publications from this project are being published in high-quality journals and are having a high level of impact.

• Published (most recent first):
  • Tartakovsky, A. M. and T. D. Scheibe, "Dimension reduction method for advection-diffusion-reaction systems," Advances in Water Resources, 34(12):1616-1626, doi:10.1016/j.advwatres.2011.07.011, 2011.
  • Tartakovsky, A. M., A. Panchenko, and K. F. Ferris, "Dimension reduction method for ODE fluid models," Journal of Computational Physics 230(23):8554-8572, 2011.
  • Battiato, I., Tartakovsky, D.M., Tartakovsky, A.M., Scheibe, T.D., "Hybrid Models of Reactive Transport in Porous and Fractured Media," Advances in Water Resources, 34(9): 1140-1150, doi:10.1016/j.advwatres.2011.01.012, 2011.
  • Xu Z., P. Meakin, A. Tartakovsky, and T. Scheibe "Dissipative-particle-dynamics model of biofilm growth," Physical Review E 83, 066702, DOI: 10.1103/PhysRevE.83.066702, 2011. Link to Article
  • Xu Z., and P. Meakin, "Phase-field modeling of two-dimensional solute precipitation/dissolution: Solid fingers and diffusion-limited precipitation," Journal of Chemical Physics 134(4):044137, 2011.
  • Battiato, I. and D. M. Tartakovsky, "Applicability regimes for macroscopic models of reactive transport in porous media," Journal of Contaminant Hydrology 120-121: 18-26, 2011. Link to article
  • Ryan, E. M., A. M. Tartakovsky, and C. Amon, "Pore-scale modeling of competitive adsorption in porous media,"Journal of Contaminant Hydrology," 120-121:56-78, DOI:10.1016/j.jconhyd.2010.06.008, 2011.
  • Ramanathan, R., A. Guin, R. W. Ritzi Jr., D. F. Dominic, V. L. Freedman, T. D. Scheibe, and I. A. Lunt, "Simulating the heterogeneity in braided channel deposits: 1. A geometric-based methodology and code," Water Resources Research, 46, W04515, doi:10.1029/2009WR008111, 2010.
  • Guin, A., R. Ramanathan, R. W. Ritzi Jr., D. F. Dominic, I. A. Lunt, T. D. Scheibe and V. L. Freedman, "Simulating the heterogeneity in braided channel deposits: 2. Examples of results and comparison to natural deposits," Water Resources Research, 46, W04516, doi:10.1029/2009WR008112, 2010.
  • Palmer, B. J., V. Gurumoorthi, A. M. Tartakovsky, and T. D. Scheibe, "A component based framework for smoothed particle hydrodynamics simulations of reactive fluid flow in porous media,"International Journal of High Performance Computing Applications, 24(2):228-239, 2010.
  • Tartakovsky, A. M., "Langevin model for reactive transport in porous media," Physical Review E 82(2):026302, DOI:10.1103/PhysRevE.82.026302, 2010.
  • Battiato, I., D. M. Tartakovsky, A. M. Tartakovsky, and T. Scheibe, "On breakdown of macroscopic models of mixing-controlled heterogeneous reactions in porous media,"Advances in Water Resources, 32(11):1663-1673, 2009.
  • Tartakovsky, A. M , G. D Tartakovsky, and T. D. Scheibe, "Effects of incomplete mixing on multicomponent reactive transport," Advances in Water Resources, 32(11):1674-1679, 2009.
  • Meakin, P. and A. Tartakovsky, "Modeling and simulation of pore scale multiphase fluid flow and reactive transport in fractured and porous media," Reviews in Geophysics, 47(3): RG3002, 2009. Link to article
  • Xu, Z. and P. Meakin, "A phase-field approach to no-slip boundary conditions in dissipative particle dynamics and other particle models for fluid flow in geometrically complex confined systems," Journal of Chemical Physics, 130(23): 234103, 2009. Link to article
  • Xu, Zhijie, P. Meakin, and A. M. Tartakovsky, "Diffuse-interface model for smoothed particle hydrodynamics," Physical Review E, 79, 036702, doi:10.1103/PhysRevE.79.036702, 2009. Link to article
  • Meakin, P. and Z. Xu, "Dissipative particle dynamics and other particle methods for multiphase fluid flow in fractured and porous media," Progress in Computational Fluid Dynamics, 9(6/7): 399-408, doi:10.1504/PCFD.2009.027371, 2009. Link to article
  • Xu, Z. and P. Meakin, "Phase-field modeling of solute precipitation and dissolution," Journal of Chemical Physics, 129, 014705, doi:10.1063/1.2948949, 2008 Link to article
  • Tartakovsky, A. M. and S. P. Neuman, "Effects of Peclet number on pore-scale mixing and channeling of a tracer and on directional advective porosity," Geophysical Research Letters, 35, L21401, doi:10.1029/2008GL035895, 2008 Link to article
  • Tartakovsky, A. M., D. M. Tartakovsky, T. D. Scheibe and P. Meakin, "Hybrid simulations of reaction-diffusion systems in porous media," SIAM Journal on Scientific Computing, 30(6):2799-2816, 2008. Link to article
  • Tartakovsky, A. M., G. Redden, P. C. Lichtner, T. D. Scheibe, and P. Meakin, "Mixing-induced precipitation: Experimental study and multi-scale numerical analysis," Water Resources Research, 44, W06S04, doi:10.1029/2006WR005725, 2008. Link to article
  • Scheibe, T., P. Meakin, P. Lichtner, and D. Zachmann, "Science for Problems under the Surface," SciDAC Review, Issue 7, Spring 2008 PDF File
• In Press:
• Submitted:
• Related: The following articles describe recent advances made by project staff on the Smoothed Particle Hydrodynamics (SPH) method for pore-scale modeling of flow and reactive transport. These three articles are not a direct outcome of this SciDAC project but are related to tools being extended and integrated under this SciDAC project.
  • Tartakovsky, A. M., T. D. Scheibe, and P. Meakin, "Pore-scale model for reactive transport and biomass growth," Journal of Porous Media, 12(5): 417-434, DOI:10.1615/JPorMedia.v12.i5.30, 2009.
  • Tartakovsky A. M., P. Meakin, T. D. Scheibe, and R. M. Eichler West, "Simulations of reactive transport and precipitation with smoothed particle hydrodynamics." Journal of Computational Physics, 222(2):654-672, 2007. doi:10.1016/j.jcp.2006.08.013
  • Tartakovsky, A. M., P. Meakin, T. Scheibe, and B. D. Wood, "A smoothed particle hydrodynamics model for reactive transport and mineral precipitation in porous and fractured porous media," Water Resources Research, 43(5):Art. No. W05437, doi:10.1029/2005WR004770, 2007.

Book Chapters

• Tartakovsky, A. M., Z. Xu, and P. Meakin, "Lagrangian particle models for biological systems," In: Porous Media: Applications in Biological Systems and Biotechnology, K. Vafai, Ed., CRC Press, Taylor & Francis LLC, Boca Raton, Florida, 2009.

Conference Proceedings

• Agarwal K., J. M. Chase, K. L. Schuchardt, T. D. Scheibe, B. J. Palmer, and T. O. Elsethagen, "Design and Implementation of Many Parallel Task Hybrid Subsurface Model," In Many-Task Computing on Grids and Supercomputers, 2011.
• Tartakovsky, A. M. and T. D. Scheibe, "Dimension reduction method for SPH equations," in Proceedings, 6th International SPHERIC Workshop, 2011.
• The following papers from the SciDAC 2009 conference in June 2009 have been published in the conference proceedings issue of the Journal of Physics: Conference Series:
  • Schuchardt, K., J. Chase, J. Daily, T. Elsethagen, B. Palmer and T. Scheibe, 2009. Application of the SALSSA framework to the validation of smoothed particle hydrodynamics simulations of low Reynolds number flows, Journal of Physics: Conference Series 180: 012065. PDF File
  • Palmer,B., Y. Fang, V. Gurumoorthi, G. Hammond, J.Fort and T. Scheibe, 2009. Developing a component-based framework for subsurface simulation using the Common Component Architecture, Journal of Physics: Conference Series 180: 012064. PDF File
• Scheibe, T. D., A. M. Tartakovsky, D. M. Tartakovsky, G. D. Redden, P. Meakin, B. J. Palmer and K. L. Schuchardt. "Hybrid numerical methods for multiscale simulations of subsurface biogeochemical processes," Journal of Physics: Conference Series 125: 012054 doi:10.1088/1742-6596/125/1/012054 PDF File (SciDAC 2008 Proceedings).
• Chase, J. M., K. L. Schuchardt, G. Chin, Jr., J. A. Daily, and T. D. Scheibe. "Iterative workflows in numerical simulations," In proceedings of IEEE - The Second International Workshop on Scientific Workflows (SWF ’08) , Hawaii, July 8, 2008. PDF File
• The following papers from the SciDAC 2007 conference in June 2007 have been published in the conference proceedings issue of the Journal of Physics: Conference Series:
  • Scheibe, T. D., A. M. Tartakovsky, D. M. Tartakovsky, G. D. Redden, and P. Meakin, 2007. Hybrid numerical methods for multiscale simulations of subsurface biogeochemical processes, Journal of Physics: Conference Series 78: 012063 doi:10.1088/1742-6596/78/1/012063. PDF File
  • Meakin, P., A. Tartakovsky, T. Scheibe, D. Tartakovsky, G. Redden, P. E. Long, S. C. Brooks, and Z. Xu, 2007. Particle methods for simulation of subsurface multiphase fluid flow and biogeological processes, Journal of Physics: Conference Series 78:012047 doi:10.1088/1742-6596/78/1/012047 PDF File
  • Palmer, B. J, Y. Fang, G. E. Hammond, and V. Gurumoorthi, 2007. Component-based framework for subsurface simulations, Journal of Physics: Conference Series 78:012047 doi:10.1088/1742-6596/78/1/012047 PDF File
  • Schuchardt, K.L., G. D. Black, J. M. Chase, T. O. Elsethagen and L. Sun, 2007. Process integration framework for subsurface simulations, Journal of Physics: Conference Series 78:012047 doi:10.1088/1742-6596/78/1/012047 PDF File

Project Reports

Cover Illustrations

• Visualization of pore-scale flow simulation using CFD methods. Simulation performed by Cindy Rakowski (PNNL); visualization by John Serkowski (PNNL). Appears on the cover of the ASCR workshop report Scientific Impacts and Opportunities for Computing PDF File
  
  (Click to view larger image)
  
  This image also appears in Manke K. L. and J. G. Wiley, "Six Science Secrets of the Subsurface." Radwaste Solutions 17(2):30-35, 2010.

• Visualization of pore-scale flow simulation by Smoothed Particle Hydrodynamics. Simulation performed by Bruce Palmer (PNNL); visualization by Chad Jones and Kwan-Liu Ma of the SciDAC Institute for Ultra-Scale Visualization. Appears on the back cover of the SciDAC 2008 Proceedings.
  
  (Click to view larger image)
  
  
• Visualization of pore-scale flow simulation by Smoothed Particle Hydrodynamics. Simulation performed by Bruce Palmer (PNNL); visualization by Chad Jones and Kwan-Liu Ma of the SciDAC Institute for Ultra-Scale Visualization. Part of the banner image for the SciDAC 2011 Conference, used for various conference materials (website, program, etc.)
  
  (Click to view larger image)